Don't know if it's the same problem you have, but I'll tell you my issues with some STI magazines.
I bought a DVC Limited in 9mm, which came with 2 126mm 10 round mags (thank you, MA). Both worked perfectly. I then purchased 4 additional magazines from various sources. All 4 had issues with locking into the frame. They would work, but only if inserted with a lot of force.
I found that the top part of the magazines, above the magazine catch notch, were out of spec compared to the ones included with the gun. Each one had the tube more squared off than the ones that worked. Wound up having to reshape the magazine bodies by using a vice and a brass mallet to tighten up the dimensions. Took a while, but finally have them working.
Sounds like STI doesn't always make their mags correctly.