After several weeks I finally gave up on the priming system on the Lee 1000 Progressive. I used a Lyman Turret press in the 70s and 80s with little or no trouble. When I decided to get back into the hobby I talked myself into the Lee 1000, but boy I wish I had gone a different direction. I can't believe how cheap and poorly made this priming system is. Nothing but problems; no primer, primer in sideways, flipped primer, jammed up press due to floating primers. Enough is enough. I removed the primer seating rod and disabled it completely. I then purchased the Lee hand priming system. My new loading procedure is this for .44 SPL:
1. Using the Lee 1000 as a single stage I deprime and size the cases.
2. Cases are tumble cleaned.
3. Hand prime all the cases with the Lee Hand Priming tool.
4. Load cases into the case feeder on the Lee 1000 and remove the Sizer/decapper die.
5. Use the Lee 1000 as a progressive press for all other stages.
With the priming stage eliminated, the press works great. I'm pretty ticked off about the quality of that system but at least now I can work around it and still produce good ammo.